I've fixed a bug in 1.4.3 that kept the "resample from raster" command from printing results to the output file. It was a very silly error; basically I had disabled printing for debugging and forgot to turn it back on!
Anyway, it's fixed now and should be working fine. While I was at it, I fixed it so that the resample command now uses the output directory set in the ENMTools Options tab, instead of printing to the directory where the layers you're resampling from are located. The new version is here: